Software

BreakPtr, discovery of unbalanced structural variants (copy-number variants) with tiling microarrays Link

BreakSeq, structural variant genotyping using split reads Link

CopySeq, genotyping of unbalanced structural variants (copy-number variants) using read-depth Link

DELLY, integrated split-read and paired-end based structural variant discovery in deep sequencing data Link

PEMer, structural variant discovery in 454 sequencing data by paired-end mapping Link